FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946353

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946353
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539067
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16890.31331912359688124No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA13540.25117471483136605No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10360.19218390292857845No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6740.1250308403222605No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6530.12113522066830283No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6430.11928016369022774No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5890.1092628560086223No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)