FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946354

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946354
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences539067
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42120.7813499991652243No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28630.5311028128228958No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16800.3116495723166137No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8240.15285669499338672No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7280.13504814800386594No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7060.13096702265210078No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6470.12002218648145778No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6340.11761061240996018No Hit

[OK]Adapter Content

Adapter graph