FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946358

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946358
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences551053
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT22910.4157494832620455No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9840.17856721585763982No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9630.17475633015336092No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9540.17312309342295568No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8650.15697219686672606No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8260.1498948377016367No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7870.1428174785365473No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7730.14027688806702804No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6870.12467040375426684No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)