FastQCFastQC Report
Wed 31 May 2023
EGAF00007946360

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946360
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533980
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42400.7940372298587963No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23590.4417768455747407No Hit
ATGTCCAACATGGACATCGATGGTATTAACA9630.1803438331023634No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9390.1758492827446721No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG8040.1505674369826585No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7600.14232742799355783No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7250.13577287538859134No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7040.13184014382561143No Hit
CGTAAAGCTAAACCGGCAACTAAGCCGGCAG6130.1147983070526986No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)