FastQCFastQC Report
Sun 21 May 2023
EGAF00007946362

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946362
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences562033
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA21320.37933715635914617No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10630.189134801693139No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10480.18646591926096867No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT10260.18255155836045214No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10040.17863719745993561No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9740.1732994325955949No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9600.1708084756589026No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG9430.1677837422357762No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7830.13931566295929243No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7830.13931566295929243No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6520.11600742305167135No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6050.10764492476420424No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5830.10373056386368772No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5770.10266301089081958No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)