FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946363

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946363
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences559557
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG20750.3708290665651578No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA19670.3515280838234532No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA16770.2997013709059131No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG15660.2798642497547167No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA14560.2602058414066842No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT12540.22410585516757006No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT12210.21820833266316034No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12210.21820833266316034No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG12150.21713605584417675No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG12030.21499150220620958No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA11070.19783507310247214No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11000.1965840834803246No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT9290.1660241941392923No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG8770.1567311283747679No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8260.1476167754134074No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC7350.13135391032548963No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG6570.11741431167870298No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG6360.11366134281226041No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6270.11205292758378503No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5920.10579797947304742No Hit
GCCCGCACCTTCTTCTTCTTCCTCTTCCTCCAGGCCGATGCTAG5720.10222372340976879No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5630.10061530818129341No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG5620.10043659537812949No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)