FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946364

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946364
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences559557
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT38100.6808957800545788No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25270.45160725359525483No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG23840.42605132274281265No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG23270.4158646929624686No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC22720.4060354887884523No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA14700.26270782065097925No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC13810.24680238116938938No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA13290.23750931540486492No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12390.2214251631201111No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11570.2067707132606687No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11530.20605586204801296No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT10110.18067864399873473No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10050.17960636717975112No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9690.1731727062658496No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7880.140825688893178No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC7840.14011083768052227No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG7340.1311751975223257No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA7140.12760094145904707No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC6640.11866530130085051No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG6540.11687817326921118No Hit
CCGCAGCTGCAGACTACCGGTCGTCCGTCTC6180.11044451235530965No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6040.1079425331110146No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5750.10275986181926058No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5680.10150887219711308No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCTG5660.1011514465907852No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5620.10043659537812949No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)