FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946366

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946366
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences592702
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC41440.6991709155697129No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG31180.5260653751801073No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA24170.4077934611322384No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA23200.3914277326548586No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT20380.34384901687525943No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG19930.3362566686125574No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG18150.306224713262314No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC17520.2955954256945312No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16040.2706250358527557No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC15530.2620203744883601No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG13360.22540838397710822No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG11910.20094415068617957No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10640.1795168567003317No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG10570.17833582474835583No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10560.17816710589807358No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC10400.1754676042935573No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10260.17310554038960557No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG10100.1704060387850893No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC9680.1633198470732341No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9640.16264497167210504No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT9280.15657109306194344No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9150.15437774800827397No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8750.14762899399698332No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8690.1466166808952897No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC8680.14644796204500743No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC8120.1369997064292005No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC7060.11911550829928025No Hit
GCAGCTCGTGAAGAAGAAGAACCGCACGAAC6620.11169187888686051No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6540.11034212808460238No Hit
GTTTTCGACAACGCGCGTCTGGTAAACTGCG6110.10308721752246491No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)