FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946369

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946369
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527584
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18260.3461060229271547No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15440.29265481894826223No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG14810.2807135925274459No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10390.19693546430521017No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9820.18613149754351913No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG9720.18423606477831017No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9330.17684387699399529No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA9200.17437981439922362No Hit
ACCAGTAGCAACTACCGCCAGATCGCGGTTCGGGTACGGTGCAA8800.16679808333838783No Hit
AGACAGGCTTTTACGAGTGGACGCAACCTGTTTACCGACAGCGT7620.1444319767089222No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7180.13609207254200278No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG7180.13609207254200278No Hit
GGCCTGTTCCTGGTTGGTAATGGACTGCGGAGTTTCGACTTCAA6910.1309744040759386No Hit
AGCGGAAGAGCCGAACAGGCGACGGCTTGCACCTGGTTTGCGGG6710.1271835385455207No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT6690.12680445199247892No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6450.12225541335597744No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6210.11770637471947595No Hit
GATGCTGGAAATGTTGGAGCGAGATTTAACCAGGGTAACAGAGC5860.11107236004124461No Hit
AGATTTCATAGCGAATGGCAGGGTCGCAATGTCTGCAATGGTCG5780.10955601382907747No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG5670.1074710377873476No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA5410.10254291259780433No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT5310.10064747983259538No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)