FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946370

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946370
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences527584
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43510.8247027961424153No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG19610.37169436525747557No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC19440.36847212955662034No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG19390.3675244131740159No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15390.2917071025656578No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG11150.21134075332079819No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC10870.20603354157821313No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10060.19068053618002062No Hit
AACTACCCGCGTGATTCTAAAACCATTATCA9160.17362164129314006No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA8630.1635758476375326No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8330.15788954934190574No Hit
GCGAACGAAGCAGGCCAGGTGGCCGGCGGTG7850.14879147206890278No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7730.14651695275065205No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7380.1398829380724207No Hit
GTGGTAGAAATGGAGGGTTACCGTTACGTGG7050.13362800994723115No Hit
ACCAGCGGTAATGTTAGCGTTGGTTATAACC6860.13002668769333414No Hit
CGTGAACGCCAGAAACGTGTTGACGATGAGG6580.12471947595074909No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG6430.12187632680293564No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG6230.11808546127251775No Hit
CCGGAAAAACTGCCGAAAACTATCGAGAAAC6090.11543185540122519No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6050.11467368229514162No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC5880.1114514465942864No Hit
CTGAACCTGCCGGAAGAAGTAGTGCAGTACA5650.10709195123430582No Hit
GGTTGCCCGCTGCCGCCGCCGCGTTCCCCGC5640.10690240795778493No Hit
GAGAAAACGAAACAGACTCTGGCTTCTGTTT5560.10538606174561775No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG5500.10424880208649237No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)