FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946371

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946371
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences617433
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC24370.394698696052851No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT24140.39097359551562677No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18500.2996276519071705No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC18330.296874316727483No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17340.2808401883281263No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT15440.25006761867279526No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14730.23856839527527682No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13290.21524602669439435No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13200.21378837865808922No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG12930.20941543454917377No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC11050.17896678667968832No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC10700.1732981554273905No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10340.16746756328216988No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8860.14349735112959625No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8790.1423636248791367No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT8470.13718087630560724No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC7070.11450635129641597No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6410.1038169323635115No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6340.10268320611305194No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC6330.10252124522012916No Hit

[OK]Adapter Content

Adapter graph