FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946372

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946372
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences617433
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA53890.8728072519609414No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29210.4730877682274838No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA25970.42061243892049827No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25870.4189928299912703No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA24120.3906496737297812No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA18540.3002754954788617No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15810.25606017171093864No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG14830.24018800420450478No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11620.18819855757628762No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC10810.17507972524954124No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10700.1732981554273905No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG9420.15256716113327276No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9420.15256716113327276No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9090.14722245166682052No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT7150.11580203843979833No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6830.1106192898662689No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG6710.10867575915119536No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6530.10576046307858504No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6440.1043028150422799No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6350.10284516700597474No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT6270.10154947986259238No Hit

[OK]Adapter Content

Adapter graph