FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946373

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946373
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389432
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT12980.33330594301444155No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11470.2945315228332546No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8200.21056307648061792No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6540.16793689270527332No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6410.16459869759033668No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5510.14148811602539083No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5460.14020419482733826No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)