FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946374

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946374
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences389432
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55941.436451036381191No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26040.6686661599457672No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12680.32560241582612626No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10580.27167772550791924No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7220.18539822099878797No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6260.16074693399617906No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG6110.15689517040202142No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4260.10939008607407713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)