FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946377

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946377
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420358
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17840.4244001541543161No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG16550.39371202641557906No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13770.32757792167628547No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC13070.31092544925991655No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12790.30426446029336895No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11650.2771447195009968No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11610.27619314964863284No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC11240.2673911285142664No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9780.2326588289029827No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9040.21505478663424987No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8680.2064906579629744No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8550.20339805594279162No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6650.1581984879555046No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6620.15748481056623165No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6550.15581956332459476No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6490.15439220854604885No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6160.14654175726404636No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5900.14035655322368076No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5450.12965139238458645No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5300.1260830054382217No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5210.12394197327040284No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5170.12299040341803892No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5170.12299040341803892No Hit
CAGGTTGTGAGATGCACGGGTACGACGGTCTTCCGGGGTATCGT4850.11537784459912741No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT4520.10752739331712494No Hit
GTTACGTTCGAAACGAATCAGATCGGTACCCTGCGCCATAGAGC4440.10562425361239705No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4420.10514846868621508No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA4310.10253165159221425No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4220.1003906194243954No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)