FastQCFastQC Report
Sun 21 May 2023
EGAF00007946378

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946378
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences420358
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA29700.7065406153802235No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG18640.44343155120159483No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC17580.41821495011395043No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT16570.39418781134176106No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14210.3380451900522888No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13310.31663486837410015No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13230.3147317286693723No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12030.28618463309845416No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA11860.28214046122590747No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11540.2745279024069959No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10270.2443155595944409No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT9470.2252841625471622No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9270.2205263132853425No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7590.18056037948605713No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7350.1748509603718735No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7310.17389939051950956No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6900.1641457995327792No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6780.1612910899756874No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT6570.15629534825077673No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6160.14654175726404636No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6140.1460659723378644No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6090.14487651002240948No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6000.14273547785459062No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5970.14202180046531765No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5530.13155453208931434No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5480.13036506977385942No Hit
CGCGCATCTATCGGTTCTAAAAGCGTCTCTA5070.12061147878712906No Hit
GCAGCTCACTCCCGTTCCGGCTCCGTGAGCC4780.11371259735749052No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC4750.11299891996821756No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC4750.11299891996821756No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4720.11228524257894462No Hit
TCTCTGCCGCAGAAATCTCACGGTCGCACTC4660.11085788780039871No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG4420.10514846868621508No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA4340.1032453289814872No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4230.10062851188748637No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG4220.1003906194243954No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)