FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946379

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946379
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376621
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9910.26312924664317705No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9220.24480844137740593No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8930.23710839278744414No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8130.2158668794358254No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7530.19993574442211137No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC6580.17471144731706412No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC5630.14948715021201686No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA5420.14391125295721693No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA5340.14178710162205505No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5250.13939743136999794No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT4930.13090082602935046No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA4680.1242628531069696No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4560.12107662610422679No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC4480.11895247476906491No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT4320.11470417209874118No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG3880.10302133975535087No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)