FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946380

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946380
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences376621
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG56981.5129267884690445No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19930.5291792013722018No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA19420.5156377366105448No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9010.23923254412260603No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC8560.22728419286232046No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8410.22330140910889196No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7180.19064258233077816No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5600.14869059346133115No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5310.14099054487136936No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5000.1327594584476171No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4910.13036978819555997No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA4770.12665252335902671No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA4590.1218731828549125No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA4120.1093937937608365No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG3990.10594204784119844No Hit
CGTCAGCGTGACGCAGAAAACCGTAGCCAGG3850.10222478300466517No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)