FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences492290
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC29800.6053342541997603No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA28880.5866460825935932No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC22490.4568445428507587No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18310.37193524142273865No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA16800.3412622641126165No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA16150.32805866460825933No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA15650.31790204960490764No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15430.31343313900343295No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14650.2975888195982043No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC14080.28601027849438343No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11940.24253996628003818No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11890.24152430477970302No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG11690.23746165877836234No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10620.21572650267118976No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10430.21186698896991613No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG10390.21105445976964798No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG9470.1923662881634809No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA9450.1919600235633468No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC8740.17753763025858743No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT8710.1769282333583863No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8650.1757094395579841No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG8430.17124052895650937No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7940.16128704625322474No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7410.15052103434967196No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7390.15011476974953786No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6990.14198947774685652No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6970.14158321314672245No Hit
TGGGCGCAGTTCCGGCGGGATTACCGGAACCGCGTCCAGTACCA6880.13975502244611915No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6420.1304109366430356No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5800.11781673403887952No Hit
TTCCAGCGCTACTGGGGAGTGACAGCTGTGGCCTTCACCGCAAT5720.11619167563834325No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT5500.11172276503686851No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5320.10806638363566191No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG5190.10542566373479047No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5080.10319120843405309No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)