FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946383

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946383
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466176
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC27020.5796094179022515No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA26280.5637355848434926No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC21010.450688152114223No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT18320.39298462383305877No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA15640.3354956068094454No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA14420.30932523338824824No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA14370.30825267710049425No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14350.3078236545853927No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14280.30632207578253706No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC13490.2893756864360242No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11710.2511926825919824No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG10870.23317373695771554No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10720.2299560680944536No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG10060.21579832509610103No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9950.2134387012630423No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA9670.20743238605161998No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG9670.20743238605161998No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9090.19499073311367382No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8350.17911690005491487No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG8180.17547020867655136No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7980.17117998352553543No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7710.1653881795716639No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA7400.15873833058758924No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG7180.1540190829214717No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7170.15380457166392092No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6530.14007585118066995No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6330.13578562602965402No Hit
TGGGCGCAGTTCCGGCGGGATTACCGGAACCGCGTCCAGTACCA6250.13406953596924764No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT5770.12377299560680943No Hit
GATGCGATGCGGGGAGTCGCAGATACGACCGGTAGAGCTGGACT5630.1207698380010983No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5300.11369096650192202No Hit
TTCCAGCGCTACTGGGGAGTGACAGCTGTGGCCTTCACCGCAAT5280.11326194398682042No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG4970.10661209500274574No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA4850.10403795991213619No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC4690.10060577979132344No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)