FastQCFastQC Report
Wed 31 May 2023
EGAF00007946384

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946384
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences466176
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG68161.4621087314662273No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA43260.9279757001647446No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC39450.8462469110378913No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA27810.5965558072487644No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT26780.5744611477210324No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA19300.41400672707303676No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA18030.38676379736408567No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT17860.38311710598572213No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG16200.34750823723228996No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG15470.3318489154310818No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14690.3151170373421197No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13850.29709809170785284No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11600.24883305875892367No Hit
TCCTACACCAACGGCAAACTGACTATCACCC10680.2290980230642504No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9660.2072178747940692No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG9330.20013900329489293No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC8870.1902714854475563No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG8580.1840506589785832No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7910.16967840472267984No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT7870.16882035969247666No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC7700.16517366831411312No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7670.16453013454146073No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7660.16431562328390995No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7430.15938186436024163No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7260.15573517298187808No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6650.14264998627127953No Hit
GAAGCAGAAAGCCTGCGTGATGTTATTCGTA6460.1385742723778144No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6320.13557111477210324No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT6110.13106637836353652No Hit
GGTAACGATAATTCTACTGCAACTCTGTGTC5690.12205690554640308No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5560.11926825919824273No Hit
CTGGGCCATCACGCAGTGCCGAACGGTACCC5500.11798119165293795No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5320.11411998901702362No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5210.11176036518396484No Hit
GGTTACTACCAGCTGCTGCAGGCCTCTCTGA5110.10961525260845689No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4900.10511051619989017No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA4840.1038234486545854No Hit
CCGAGCACTAAACCGCGTCCGAAAAACCCTC4760.10210735859417902No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)