FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946385

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946385
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences386703
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT16770.4336661468879217No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA11330.2929897104496215No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT10020.2591135832926044No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9680.2503213060152107No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6400.165501689927412No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT5790.14972731010620555No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5650.14610696063904338No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5600.1448139786864855No Hit
TGCACGTTCCGGAGACGGGTTACGGGTGCGTTTGTTAGACGGCG5250.13576310501858013No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5170.13369433389448748No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4910.1269708277411864No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG4890.12645363496016324No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4800.124126267445559No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG4360.11274802626304942No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)