FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946386

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946386
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences386703
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57441.4853776670985226No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24920.6444222051548604No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT16230.41970194180029635No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10280.2658370894459055No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6170.1595539729456456No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA6090.15748520182155298No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5920.1530890631828561No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5490.1419694183908581No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA5480.14171082200034651No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5230.13524591223755697No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5150.13317714111346432No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5080.13136696637988327No Hit
TCCTACACCAACGGCAAACTGACTATCACCC4920.12722942413169797No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4430.1145582009966305No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT4160.10757609845281779No Hit
GTTCTGGTGCTGAACGAGCAGTCCGCATACC3970.10266276703309776No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)