FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946387

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946387
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences422804
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11710.276960482871496No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9260.219014011220329No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8850.20931684657666438No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG7800.18448264444044996No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7600.17975232022402815No Hit
AACAGCGGTAGACGGAGCGGAAGAGGCCAGAGCGCCAGTACCCG6730.15917540988259335No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5880.13907153196280073No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5500.13008391595159932No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA5300.12535359173517754No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG4800.11352778119412305No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA4690.11092610287509105No Hit
TTGGGATACAATGGTAGAACGCAGCTGCAGACCGCCGCTACCTG4490.10619577865866926No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4460.105486230026206No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC4380.10359410033963729No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG4240.10028287338814201No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)