FastQCFastQC Report
Wed 31 May 2023
EGAF00007946390

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946390
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences440890
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31540.7153711810202091No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25250.5727052099163057No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA25100.5693030007484859No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21380.48492821338655906No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT15200.34475719567238994No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14790.33545782394701623No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14300.3243439406654721No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG13080.2966726394338724No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12790.29009503504275447No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11670.2646918732563678No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10290.23339154891242714No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10230.2320306652452993No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC10140.2299893397446075No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9770.22159722379731908No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG8070.1830388532286965No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7550.17124452811358842No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7460.16920320261289665No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT7430.1685227607793327No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7250.16444010977794915No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC7240.16421329583342784No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG6730.15264578466284107No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6580.14924357549502143No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6040.13699562249087074No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG5720.12973757626618884No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5660.12837669259906098No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA4830.10955113520379232No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4690.106375739980494No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4690.106375739980494No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4680.10614892603597269No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)