FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946391

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946391
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388107
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC29050.7485049226115479No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA24680.6359071080913253No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC22980.5921047546166393No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT21920.5647926989206585No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA19900.5127451965566198No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA17510.4511642407892669No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT16300.4199872715514021No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT14270.36768210828457104No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA14200.3658784819650251No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT11110.28626126300221333No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG11040.28445763668266744No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10870.2800774013351988No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT9830.2532806674448026No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC9320.24013996140239677No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9220.23756335237447407No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8700.22416498542927593No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8330.21463153202596189No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7210.18577351091322752No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT6550.16876789132893763No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC6480.16696426500939174No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6360.16387233417588448No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6300.16232636875913087No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG6210.16000742063400042No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6200.15974975973120814No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG6020.15511186348094724No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG5960.15356589806419366No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5950.15330823716140138No Hit
GTCGGTGCAGTTCAGACAAGTTGGGCACAGTTTACCACGAGTTT5920.15253525445302454No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA5720.14738203639717914No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG5610.14454776646646414No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5580.14377478375808733No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5500.14171349653574916No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5490.14145583563295688No Hit
CGGCACCTGCGGTTTGCGGGTACCGCTGAAGCGTGGGTGATGCT5480.14119817473016463No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5440.14016753111899552No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5360.13810624389665735No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5150.13269536493801967No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA5150.13269536493801967No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC4980.12831512959055105No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG4870.12548085965983607No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG4830.12445021604866699No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA4480.11543208445093749No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC4380.11285547542301479No Hit
CATGCATTTTGGGCGGCCCAGGGCAACGTCCAGATCAGTGCAGT4240.109248222783923No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG4010.10332202201970075No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG4010.10332202201970075No Hit
TTCCTGGTGATACTCAAAGTAATCAGCTTCACCCACCGGATGGA3950.10177605660294713No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)