FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946392

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946392
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences388107
Sequences flagged as poor quality0
Sequence length31
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG55861.439293802997627No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC39751.024202088599278No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA25050.6454405614946394No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC22670.5841172666300788No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG22540.5807676748937793No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT21230.5470140966279917No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT19440.5008927950281752No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT17210.4434344137054988No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG15030.38726433689678363No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC14980.3859760323828223No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11540.29734068182228096No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11210.288837872030136No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10890.2805927231407834No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10760.2772431314044838No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10650.2744088614737688No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT10050.25894920730623255No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC10030.25843388550064805No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9190.2367903696660972No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT9100.23447142154096678No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC9080.23395609973538226No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8770.22596861174882182No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA7650.19711059063608746No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7610.19607994702491838No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7170.18474286730205844No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7080.18242391917692802No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6880.17727070112108256No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6670.1718598221624449No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA6530.1682525695233531No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6500.16747958681497627No Hit
TCCTCCAACAGCCCGCACGTGGTTAAAACCG6440.16593362139822265No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC6400.16490297778705357No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6240.16078040334237723No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6170.15897677702283133No Hit
TCTCCGCCGCGCCGTCCGCCGCCGGGTCGTC6030.15536952438373952No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5680.14635139278601003No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5570.14351712285529505No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA5530.142486479244126No Hit
CCACGTCGCCCGCCGCCGGGCCGTCGTCCTT5490.14145583563295688No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5470.14094051382737235No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5420.139652209313411No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5210.1342413303547733No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5170.1332106867436042No Hit
ATGAGCCACCAGAGCCTGGACGATGACGCTG5130.13218004313243514No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG4820.12419255514587473No Hit
GTGCGTTATTTCCGTGGCCGCGGCAGCGGTT4720.121615946117952No Hit
CAGGGTGCCCTGACTCTGAGCCTGCCGAAAC4670.12032764160399066No Hit
GAACGCGCACGTGGTCGTGGCCGTGGCCGTG4550.11723571077048339No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG4240.109248222783923No Hit
ACCCAGGGCGAAGTAAACGTGACGGGTGTTA4070.10486798743645437No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4020.10357968292249303No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT3940.10151839570015486No Hit
GCACTGACCCTGAGCCTGCCGAAACAGCAGG3920.1010030738945703No Hit
GCGCTGACTCTGTCCCTGCCGAAACAGCAGG3910.10074541299177804No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)