FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946396

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946396
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences470211
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC27710.589309905553039No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC22000.4678750603452493No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20700.4402278976884845No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG20590.43788852238675835No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA20390.43363511274725597No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG19310.41066670069394384No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA19200.4083273253922175No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA17060.3628158422495433No Hit
GAACCGATCTACGCTACCATCGACGACCTGG16990.3613271488757175No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC16650.35409635248856364No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG15750.3349560091108034No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG15720.3343179976648781No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14990.31879305248069484No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA14640.3113495856115659No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13660.29050787837800474No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC12150.25839463559976267No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC10620.22585605185757035No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG10480.22287866510991874No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10150.21586053920474No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9840.20926775426351152No Hit
TCCTACACCAACGGCAAACTGACTATCACCC9430.20054826450253185No Hit
TTCGTGTCTCAGCACACCATGCCGCGTAGCT9060.19267945666945266No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA8480.1803445687148961No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8450.17970655726897072No Hit
GCACCAACCTGCAACATCAAAGTAACCGTTT8240.17524047714749336No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8120.172688431363792No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8060.1714124084719413No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG7900.1680096807603395No Hit
GCTATTAAAGATCTGGTGATGACGAAACCGG7640.16248024822898657No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT7640.16248024822898657No Hit
AACACCCTGTGCGTACAGCTGAAGGCGAAAA7120.15142138316628068No Hit
ATGGCCGACATCACTGAAACCCAGGAATCCC7040.14972001931047976No Hit
GCACCGACCTGCAACATCCGTGTGACCGTTT6920.1471679735267784No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6570.13972450665764943No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6500.13823581328382364No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6340.13483308557222184No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6260.13313172171642093No Hit
GGTTTTGATAAACCGAATAAATCTCAGGCAA6120.13015433496876933No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG6070.12909098255889379No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA5910.12568825484729196No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5880.12505024340136664No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC5880.12505024340136664No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5690.12100950424383947No Hit
GCCGAGGGTCTGAAGGACGCGATTAAAGACC5600.11909546990606344No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG5470.11633075364038697No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG5460.11611808315841185No Hit
GATATTCGTGTTTACGGCATGAACGGCTGCA5420.11526740123051142No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG5350.1137787078566856No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5340.11356603737471051No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG4930.10484654761373086No Hit
GGTGATGCGGTGCGTGATGCTGTATTCAACG4860.10335785423990507No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT4820.10250717231200461No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)