FastQCFastQC Report
Wed 31 May 2023
EGAF00007946397

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946397
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences443528
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18950.42725600187586804No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG18290.4123753179055212No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA17780.40087660756479865No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG16040.36164571346115687No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG16030.3614202485525153No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG15780.3557836258364748No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA15670.353303511841417No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT15460.348568748759943No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT13470.30370123194026083No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA13060.29445717068595445No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12590.2838603199797984No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT11390.2568045309428041No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG10100.2277195577280352No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT10090.2274940928193936No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG9910.22343572446384447No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT9440.21283887375768834No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA8880.2002128388737577No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8830.1990855143305496No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8460.1907433127108097No Hit
GAAGCGGATGTTTTTACGTTTCATTTCGCCGATGGTTTCACGAA8430.19006691798488484No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA8380.18893959344167674No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8320.18758680398982702No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC8300.1871358741725438No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7830.1765390234663877No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA7760.17496076910589636No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7640.17225519020219693No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG7580.1709024007503472No Hit
ATCACGCATCATCAGCTGGAAGGTTTTAATGCTTTCTGGGAAAC6830.15399253260222578No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC6780.1528652080590177No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6480.14610126079976912No Hit
GCCAATACCCTTCTGACGTTCCTGGAACCATTTCAGTTTATCCA6380.14384661171335295No Hit
TTCATCACCATCACCGCCTTCGTCACCGTCATCGCCGTCATCGC6070.13685719954546274No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG6050.1364062697281795No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5880.13257336628127198No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5870.13234790137263036No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC5650.12738767338251475No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5590.12603488393066503No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5570.1255839541133818No Hit
GAATGGTTCGTCGTCCTGCGGGCGACGGTAATCCGGCTGCAGTA5540.12490755938745694No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5440.12265291030104074No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5430.12242744539239914No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC5430.12242744539239914No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA5410.12197651557511589No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG5400.12175105066647426No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG5270.11882000685413323No Hit
ACGAACCTGGATGCGAATGGTACGGTTATCAACTTTAACCAGAT4930.11115419996031817No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4740.10687036669612743No Hit
CAGCACGACTTTAGACGCTTTGTTACCGTATTTAACAACATAGG4610.10393932288378636No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4530.1021356036146534No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)