FastQCFastQC Report
Sun 21 May 2023
EGAF00007946399

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946399
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415462
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16870.40605398327644887No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16280.39185292517727255No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14310.3444358328800227No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12650.30448031348234017No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA12570.3025547462824518No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11640.28017002758375015No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11610.279447939883792No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10550.25393417448527184No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10310.24815747288560686No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7770.18702071428915282No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA7510.18076262088951575No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7480.18004053318955765No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7370.1773928782897112No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6860.1651173873904232No Hit
CGGATACAGTGCCGGGGCGTTATCACCGACCAGACCCAGGAAGC6450.15524885549099557No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA6340.15260120059114912No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6170.14850937029138644No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5720.13767805479201467No Hit
TTCGATGGTATCCGGTTCGTCAGAGTTGCTTTCCAGTGCCAGTT5680.1367152711920705No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5570.13406761629222408No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA5340.12853161059254517No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG4890.11770029509317338No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT4870.1172189032932013No Hit
AATGATCGGGAATGGACCGCGAACCGGGCCCAGAACCGGTTCTT4440.10686897959380161No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4280.10301784519402496No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4240.1020550615940808No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4190.10085158209415061No Hit
TTCCTGGTTAACGCCGATCATCGGCTCTTTCTGCTGTGCGTCAA4180.10061088619416456No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)