FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946400

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946400
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415462
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57801.391222301919309No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA33630.8094603116530513No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22210.534585593868994No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT16360.39377849237716084No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15400.37067168597850103No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA13230.31844067568153045No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12960.31194188638190734No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA12950.31170119048192135No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT12850.3092942314820609No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG11720.28209559478363844No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11300.2719863669842248No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8180.19688924618858042No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7820.18822419378908298No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6830.16439529969046507No Hit
CTGCAGGCGCCGAAAACTCGCTCCACCACCA6530.15717442269088389No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6320.15211980879117706No Hit
ACCACCCTGGGTCGTAACTGCTACAACCTGT6180.1487500661913725No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5770.13888153429194489No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5740.13815944659198676No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5170.12443978029278249No Hit
CTGATCCTGGGCCTGGTTCTGGAACAGGTGC4880.11745959919318735No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4740.11408985659338278No Hit
GTGATGTTTCCGCCGCAGTCCGTGCTGTCCC4650.11192359349350843No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4350.10470271649392723No Hit
TCCGAGCGTTATCTGGGTTACCTGGAACAGC4190.10085158209415061No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4170.10037019029417853No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)