FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946403

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946403
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences533746
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT21540.4035627433273505No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16780.31438174712316347No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13740.2574258167742709No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13620.255177556365762No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11410.21377209384238946No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA11180.20946292805941402No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10830.2029055018679297No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10570.19803427098282703No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG9130.17105514608072003No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9020.16899424070625355No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8490.15906442390200584No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7960.1491346070977581No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7740.1450127963488251No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7710.14445073124669788No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7590.14220247083818893No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7490.14032892049776485No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6870.12871290838713545No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6840.12815084328500823No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6340.11878309158288773No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG6170.11559805600416678No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5900.1105394700850217No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5670.1062303043020463No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5450.10210849355311329No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)