FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946408

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946408
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences562132
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19660.34973991873794763No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17220.3063337436758626No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12790.22752663075576554No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11370.20226566002291274No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11190.19906356514128354No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10060.17896152505105561No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9510.16917734624607741No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8090.14391637551322464No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8000.14231532807241004No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7270.1293290543858026No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7040.12523748870372084No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6660.11847751062028136No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6510.11580909821892367No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)