FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946412

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946412
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences555936
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT23460.42199102054912796No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG15660.2816871006734588No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC14740.265138433200944No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13350.24013555517181834No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11910.21423329304092556No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9580.17232199389857825No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG8880.1597306164738387No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8730.1570324641685374No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC8510.1530751741207621No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8130.14623985494733208No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG8130.14623985494733208No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7460.1341881079836528No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7320.13166983249870487No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7030.12645340470845565No Hit
ATGTCCAACATGGACATCGATGGTATTAACA5910.10630720082887238No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5830.10486818626604501No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5790.10414867898463133No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5760.10360904852357104No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)