FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946414

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946414
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences540127
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49740.9208945303604523No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23520.4354531434273791No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18550.34343774704837937No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10490.194213583101752No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9730.18014281826311218No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8780.16255436221481243No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8370.1549635548676515No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6020.11145526885343632No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5510.10201304508013856No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)