FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946415

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946415
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences570924
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12330.21596569771107887No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12160.2129880684644541No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11570.20265394343205048No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC11060.19372105569217618No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC8350.14625414240774604No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT8280.1450280597767829No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA8200.1436268224842536No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7010.12278341775788021No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6850.1199809431728216No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA6560.11490145798740288No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC6070.1063188795706609No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)