FastQCFastQC Report
Wed 31 May 2023
EGAF00007946416

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946416
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences570924
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT28700.5026938786948876No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18470.3235106599127029No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14810.2594040537794873No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11590.20300425275518283No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9990.17497950690459677No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9350.16376960856436235No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA9110.15956589668677443No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA8280.1450280597767829No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7740.1355697080522101No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7150.1252355830198065No Hit
ATGGACGAACTGCAGCCGACCATGCAACTGA6820.11945547918812312No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)