FastQCFastQC Report
Wed 31 May 2023
EGAF00007946420

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946420
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543960
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51120.9397749834546658No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT25850.47521876608574165No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14130.25976174718729317No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10950.2013015662916391No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10940.2011177292447974No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8550.157180675049636No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7050.12960511802338406No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6750.1240900066181337No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6000.11030222810500773No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5860.1077285094492242No Hit
CTGAAGGCGACCACCACCCACCTGTTCGAAG5800.10662548716817413No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)