FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946421

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946421
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534207
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCAAACTTCGTCGGCCGCATCACGAGAAGCGGTCTGAGTGACGG20090.37607144795931163No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA18110.33900716388965324No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA17360.32496766234811597No Hit
AATACCGCGGCCCTGGTTGTACACGCCGTGGTGTTCATGTGCGT11710.21920341740186855No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT10830.2027304022597982No Hit
GTAATCGTTGCGTGGCCAGATGTACGGAGAGTTGTGGTCGTATG9610.1798928130855642No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG9090.17015875868343172No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9060.1695971786217702No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT8810.1649173447745911No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT8450.15817838403465323No Hit
CGCGGACATCTGGGTCGGCTGCATCAGGCGTTCACCAGAATCGA8420.15761680397299174No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG8390.15705522391133026No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG8360.15649364384966877No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8230.15406013024913565No Hit
TGCGTCTTCGAAATCCTCGTCATCGTCATCTTCTTCTTCACGCA7970.14919310304806938No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7740.14488765590866462No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7550.14133098218480852No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG7390.13833588852261391No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7340.13739992175317806No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6280.11755742624113873No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6280.11755742624113873No Hit
TGCATCTTCGAAGTCTTCATCATCGTCGTCGTCTTCTTCTTCAC6210.1162470727639286No Hit
CCCATGACGGATTCCTGTCACCGAAGGATGCGTACTCCTGGCGA6200.11605987941004142No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC6120.11456233257894412No Hit
CGTACTCCTGGCGACAGAGAAAATGGCGGTGACGTTATTTAAAT5900.1104440787934265No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC5430.10164599116072982No Hit
CGGCGAAGCGACCGTTGAAAAAGGTGGATGCAACTGATTTAAAT5410.10127160445295551No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)