FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007946425

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946425
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512240
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA16330.3187958769326878No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15820.3088396064344838No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA14840.28970794939871936No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14760.28814618147743243No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14290.2789707949398719No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG14030.2738950491956895No Hit
GCGGACGGACATCTGAGACGGGGAACGCGGTGGGTTCGGGGTCC13470.26296267374668125No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13200.25769170701233796No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA13070.2551538341402467No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG11710.22860377947836955No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11350.22157582383257848No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA11230.21923317195064815No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT10130.1977588630329533No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT10040.19600187412150555No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG9840.19209745431828829No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG9610.18760737154458848No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9340.1823364048102452No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7670.14973449945338124No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG7630.14895361549273778No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7620.1487583945025769No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7320.14290176479775105No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7190.14036389192565984No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7090.13841168202405124No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA6970.13606903014212088No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG6260.12220833984069968No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA6130.11967046696860846No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG5740.11205684835233484No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5420.10580977666718724No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5320.10385756676557863No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5280.10307668280493518No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC5250.1024910198344526No Hit
GTGCAGGGACAGATCCAGCGGTGCATCTGGGTCCTCGTAACGTG5210.10171013587380916No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)