FastQCFastQC Report
Wed 31 May 2023
EGAF00007946426

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946426
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences512240
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48080.9386225206934249No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35930.7014290176479776No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA31630.6174839918788068No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC22060.43065750429486177No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA15500.3025925347493363No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14740.28775573949711075No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14420.28150866781196315No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA14190.2770185850382633No Hit
CTGGAACGTCCGGTGTACCCGAAACCGGTTC13310.25983913790410745No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13110.2559347181008902No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA12760.24910198344526005No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG12320.2405122598781821No Hit
CCGAAGAAAAACCGTAAACCGAAGCCACCGA11390.22235670779322195No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10710.2090816804622833No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA10060.19639231610182728No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10010.19541621115102295No Hit
ATGATGGACCCGAACTCTACCAGCGAAGACG9980.19483054818054038No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC8180.1596907699515852No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8030.15676245509917225No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7730.1509058253943464No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7510.14661096361080744No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG6750.1317741683585819No Hit
GCCGGTGATTCCCCAACTCCGGGCCCGTCCA6620.1292362954864907No Hit
CGCGGCCGTGGTAAAGGTAAGTCTCGTGATA6580.12845541152584725No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5910.1153756051850695No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC5830.11381383726378261No Hit
CGCCGTCCGCCACCTGGTCGTCGCCCGTTCT5520.10776198656879588No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5330.10405278775573949No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5300.1034671247852569No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5180.10112447290332657No Hit
TCCTGGGCCCCGAGCGTATGCGCGCTGTCTG5140.10034358894268312No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)