FastQCFastQC Report
Sun 21 May 2023
EGAF00007946427

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946427
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences537835
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT35220.6548476763319605No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT22080.41053482945513026No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA21810.4055147024645105No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT18990.3530822650069259No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14720.2736898863034202No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT14670.27276023315700915No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG13500.25100634953099No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT13020.24208167932544367No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11860.22051372632870678No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11050.20545334535684734No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT10780.20043321836622757No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10770.20024728773694536No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10330.1920663400485279No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10150.188719588721448No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG9560.17774968159379737No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA9390.1745888608959997No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9380.1744029302667175No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9190.1708702483103554No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7990.14855857279648962No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT7680.14279472328874096No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7160.13312633056606582No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7120.13238260804893695No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7090.1318248161610903No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA6960.1294077179804215No Hit
GCAAACTTTCGGCAGGTGGGTTGCAGTCTGGTAAATGCGAGAGA6500.12085490903343962No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6270.11657850455994867No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6170.11471919826712654No Hit
GCCGTTTTCGATAAAACCGGCAATAGCACCGAAGATGCCACGGG6140.11416140637927989No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5710.10616638932014466No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT5650.10505080554445137No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT5550.10319149925162921No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)