FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946429

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946429
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541899
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT34660.6396025827691139No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT23560.4347673643981627No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA22140.4085632193453023No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT19290.35597039300681493No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15710.28990642167636405No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC14550.26850021867543583No Hit
CGGGTGGGTTTTCGGGGTCGGCCAAGGCAGTTTACGCGGCTTTT14080.25982701573540457No Hit
AACGGTTACGCTGCTCTGTTCAGACGGACCCGGGCGTTCCGGGG13800.25466000121793914No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG12260.22624142137187925No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11250.20760326186245037No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10970.20243624734498497No Hit
ACCTGCGGAGGTAACGTTGTTGTTGGTTTTCGGAGCGGTGGTGT10840.20003727631901885No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA10410.19210221831005408No Hit
AACGGTGACGCTAGACTGTTCGGAAGGACCCGGACGTTCTGGAG10280.189703247284088No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA10100.18638159509428878No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG9900.18269087043895632No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9220.17014240661082602No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG9010.1662671457227269No Hit
GACGCTGCTCTGTTCAGACGGACCCGGACGTTCAGGGGTGGACT8090.14928981230819766No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7790.14375372532519898No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7590.14006300066986652No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG7500.13840217457496692No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7280.13434237745410124No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG7170.13231247889366837No Hit
CCACTGTTCCGGAACCAGTGGACCTTCCATCGGCTGCTGAGGCA7080.13065165279876878No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT6660.12290113102257064No Hit
GCAAACTTTCGGCAGGTGGGTTGCAGTCTGGTAAATGCGAGAGA6390.11791865273787182No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5860.10813823240124082No Hit
GCCGTTTTCGATAAAACCGGCAATAGCACCGAAGATGCCACGGG5760.1062928700735746No Hit
AACGCTAGACTGTTCGCTCGGACCAGGACGTTCTGGAGTGGACT5540.1022330729527089No Hit
CACGCTAGACTGCTCGGACGGACCTGGACGTTCTGGGGTAGACT5530.10204853671994228No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)