FastQCFastQC Report
Wed 31 May 2023
EGAF00007946430

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946430
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences541899
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51050.9420574682736083No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA34110.6294530899669496No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA33070.6102613217592208No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT24040.4436251035709607No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT21580.39822919031037146No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC21370.39435392942227243No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT19260.3554167843085151No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA16130.29765694345256216No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14840.27385176942566786No Hit
TCCCGCGTTCCGGCTAAAAAACCGCGTAAAC14420.26610124764946974No Hit
GGTCGTCAGGGCTCCGACGTCGAGCTGGAAA13860.2557672186145389No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12370.2282713199323121No Hit
TCTCGCGTGCCGGCGAAGAAACCGCGTAAAC11960.2207053343888806No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11770.21719914596631476No Hit
GACCCAGCTATCGTTCAGCCGAAAGCAGCAA11570.2135084213109823No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10390.19173314584452084No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9560.17641663852489117No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC9250.17069601530912587No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8950.1651599283261272No Hit
ATGGAGCCAGTTCAGCAGCGCCCGGTTATGT8110.1496588847737309No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7950.1467063050494649No Hit
GTGGCCCCGCTGCGTGCGTCCATGGGTCCGG7500.13840217457496692No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT7020.12954443540216903No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6790.12530010204853673No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC6690.12345473972087048No Hit
GAACTGCACCAGGAAGAACCACTGTGCGTTT6460.11921040636723819No Hit
CCGAATGACAAACCATTCCAGAACGTTAACC6190.11422792808253937No Hit
ATGGAACCGGTCCAGCAGCGTCCGGTTATGT6080.11219802952210652No Hit
TCTACCGAAAGCGTTGACAAAAACTTTGTTG5880.10850730486677407No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA5740.10592379760804135No Hit
GCGGAGCAGCACACGCCGATGAAGGCGCACG5450.10057224685780929No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG5420.10001863815950943No Hit
TCTGGCCCGCAGCCGCAGGGCCCGCAGCAAC5420.10001863815950943No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)