FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946432

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946432
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences500252
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG46630.9321302063759865No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT22660.4529717022620599No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC16840.336630338309492No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG14830.2964505889031928No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG12810.25607094024611593No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC12230.2444767837010147No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG11910.23808000767613124No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA10930.21848988109992562No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10870.21729048559525999No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA10800.21589119083981673No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10320.20629602680249157No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG10130.20249794103771698No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC9980.19949945227605287No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG9750.19490176950816787No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA9340.18670590022628594No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8200.16391738563763864No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC8180.16351758713608341No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8080.16151859462830734No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8070.16131869537752971No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7650.1529229268448702No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC7630.15252312834331497No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC7620.15232322909253737No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT7500.14992443808320605No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7390.14772554632465237No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG7240.14472705756298826No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA7230.14452715831221066No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7040.1407290725474361No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT6910.13813038228732719No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6590.1317336062624437No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC6490.12973461375466766No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT6290.12573662873911548No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6260.12513693098678266No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6160.12313793847900659No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG5970.11933985271423203No Hit
GATGTCCAGTCTGGTGCGATCGTTGAACCGG5840.11674116245412311No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC5520.11034438642923967No Hit
CGTCACGCACATCGCCAGGGTGTAGGCGGCA5440.10874519242301879No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)