FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946433

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946433
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506321
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18130.35807323812364095No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC14950.2952672316573873No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14380.2840095512530588No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG13440.26544425374416625No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12840.2535940638448731No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA12780.2524090448549438No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12330.24352140243047393No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12190.24075635812063886No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA11950.23601628216092163No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10750.21231590236233536No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10490.20718082007264166No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10040.1982931776481718No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9200.18170291178916143No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9160.18091289912920855No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT8710.1720252567047387No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8280.16353262061024526No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8060.15918755098050447No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7740.15286744970088145No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7530.14871988323612886No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7180.1418072724615412No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT7040.13904222815170614No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG6870.13568467434690643No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6140.12126694330276643No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6030.11909440848789601No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG5980.11810689266295493No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5840.11534184835311986No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5820.11494684202314341No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5630.11119428188836726No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5500.10862674074352043No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5260.10388666478380315No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)