FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946434

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946434
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506321
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48900.9657904767923905No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT29460.581844324055293No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24370.48131521307628955No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA15590.3079074342166333No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA15460.3053398930717865No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13740.27136934869381285No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG13490.26643176956910736No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13240.26149419044440186No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12150.23996634546068601No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11560.22831365872638107No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10630.20994586438247673No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10060.19868818397814825No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9640.19039305104864304No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9080.1793328738093028No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9000.17775284848939704No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG8970.1771603389944324No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8930.17637032633447952No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8600.16985272188986827No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8330.16452013643518637No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7620.15049741172102282No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC7570.1495098958960817No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7190.1420047756265294No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7190.1420047756265294No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6200.12245196229269575No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6140.12126694330276643No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6040.11929191165288423No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5990.11830439582794314No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5890.11632936417806095No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5870.11593435784808452No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5820.11494684202314341No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5760.11376182303321411No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5650.1115892882183437No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5450.10763922491857932No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5440.1074417217535911No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5120.10112162047396811No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)