FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946435

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946435
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528151
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC20370.3856851544350006No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC15190.2876071426542788No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA15030.2845777059969592No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14640.2771934541447427No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG14060.2662117462619592No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13310.2520112619307736No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12860.24349097133206224No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12570.23800011739067045No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12510.23686407864417564No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11250.21300726496778383No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10600.200700178547423No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10540.19956413980092816No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG9600.18176619943917552No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9600.18176619943917552No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9010.17059515176530954No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT8660.16396825907742293No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8330.15772004597170128No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT8250.15620532764304146No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA8010.15166117265706208No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7830.14825305641757755No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7700.14579163913350537No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT7290.13802870769912393No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6890.13045511605582494No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG6290.11909472859087647No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6220.11776935005329914No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6200.11739067047113419No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5700.10792368091701048No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5620.10640896258835067No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5520.10451556467752593No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5480.10375820551319605No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)