FastQCFastQC Report
Wed 31 May 2023
EGAF00007946436

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946436
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences528151
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT32930.6234959320345886No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC26850.5083773390564441No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16750.31714415006314484No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA15850.3001035688657221No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG14680.27795081330907256No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT14100.26696910542628904No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13590.25731277608108283No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13550.256555416916753No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11760.22266359431299004No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11340.2147113230875261No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11000.20827377019072196No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10830.2050549937423199No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10320.19539866439711367No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC10020.18971847066463948No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG9550.18081950048376316No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9510.18006214131943327No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9380.1776007240353611No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG9030.17097383134747451No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8730.16529363761500024No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8230.1558266480608765No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8010.15166117265706208No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC7790.14749569725324765No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7730.1463596585067528No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG7110.1346205914596394No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7050.13348455271314452No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6570.12439624274118576No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG6360.1204201071284538No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6350.12023076733737133No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6350.12023076733737133No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6170.11682265109788678No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6120.1158759521424744No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6050.1145505736048971No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6040.11436123381381462No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5380.1018648076023713No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5350.10129678822912386No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)