FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007946437

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007946437
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences506873
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8380.16532740942997556No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7540.14875521087136226No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5950.11738640645684421No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA5930.11699183030068677No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT5640.1112704760364036No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5570.1098894594898525No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)